Unveiling Novel Tumor-Associated Antigens to Overcome Diagnostic Challenges in Barely Seroreactive Colorectal Cancer Patients Using Mass Spectrometry-Based Proteomics

  • Proteomics. 2026 Sep 15:e70181. doi: 10.1002/pmic.70181.
Javier Velázquez-Gutiérrez  1  2 ,  María Garranzo-Asensio  1 ,  Rodrigo Sanz-López  3 ,  Jana Dziakova  3 ,  Carmen Povès  3 ,  María Jesús Fernández-Aceñero  4  5 ,  Javier Martínez-Useros  6  7 ,  Ana Montero-Calle  1 ,  Susana Campuzano  8  9 ,  Rodrigo Barderas  1  8
Affiliations
  • 1. Functional Proteomics Unit, Chronic Disease Programme (UFIEC), Instituto De Salud Carlos III, Madrid, Spain.
  • 2. Escuela de Doctorado, Universidad Autónoma de Madrid, Madrid, Spain.
  • 3. Instituto Investigación Clínico San Carlos (IdISSC), Hospital Clínico San Carlos, Madrid, Spain.
  • 4. Department of Pathology, Hospital Clínico San Carlos, Madrid, Spain.
  • 5. Departament of Legal Medicine, Psychiatry and Pathology, Universidad Complutense, Madrid, Spain.
  • 6. Translational Oncology Division, OncoHealth Institute, Health Research Institute Fundación Jimenez Diaz, Fundación Jimenez Díaz University Hospital, Universidad Autónoma de Madrid (IIS-FJD, UAM), Madrid, Spain.
  • 7. Area of Physiology, Department of Basic Health Sciences, Faculty of Health Sciences, Rey Juan Carlos University, Madrid, Spain.
  • 8. CIBER of Frailty and Healthy Aging, CIBER, Madrid, Spain.
  • 9. Departamento de Química Analítica, Facultad de CC. Químicas, Universidad Complutense de Madrid, Madrid, Spain.
Abstract

The humoral immune response plays a critical role in Cancer immune surveillance, producing autoantibodies against tumor-associated Antigens (TAAs). These autoantibodies show potential as non-invasive biomarkers for early Cancer detection in Colorectal Cancer (CRC), a leading cause of cancer-related mortality worldwide. Despite their potential, the existence of non-seroreactive CRC patients to common TAAs poses a significant challenge, limiting the effectiveness of autoantibody-based diagnostics. Focusing on previously identified non-seroreactive CRC patients, we have employed high-resolution proteomics to profile their humoral immune response, enabling the discovery of novel CRC-specific TAAs to address this diagnostic gap. These TAAs were expressed in mammalian cells with 6xHisTag and HaloTag to enhance their detection and seroreactivity assessment through ELISA-like tests. Our integrative approach revealed previously undetected TAAs, expanding the panel of CRC-specific biomarkers. By overcoming the limitations of traditional diagnostics, this study provides a deeper understanding of the humoral immune response in CRC and underscores the potential of proteomic-driven strategies to improve early detection. These findings expand the repertoire of CRC-associated serological targets and support the use of immunoproteomic strategies to identify complementary Antigens in CRC patients, paving the way for the development of liquid biopsy-based diagnostic approaches for individuals previously classified as non-seroreactive.

Keywords
DIA mass spectrometry; autoantibodies; biomarker discovery; colorectal cancer; immunoaffinity purification; liquid biopsy; seroproteomics; tumor‐associated antigens.